skills: install only prdlk/skills, prune other sources; prompt to replace non-checkout external targets

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@@ -4,13 +4,13 @@ The shared agent skill library and the shell entry points for coding agents.
The repo manages the agent skill library only. Claude Code (`~/.claude`) and omp (`~/.omp`) configs are not in this repo. omp, opencode, and crush are global mise tools (`packages.shared.mise`, installed by [15-tools](../chezmoi/scripts.md#15-tools)) and are updated by topgrade's `mise upgrade`; no other agent CLI is installed by chezmoi.
- [Skills](skills.md): Agent skills declared in `.chezmoidata/skills.yaml` and installed into `~/.agents/skills` and `~/.claude/skills` by an apply script.
- [Skills](skills.md): Every agent skill in [prdlk/skills](https://github.com/prdlk/skills), installed into `~/.agents/skills` and `~/.claude/skills` by an apply script.
## Pages
| Page | Source in repo | Target in `$HOME` | Covers |
| --- | --- | --- | --- |
| [Skills](skills.md) | `.chezmoidata/skills.yaml`, `.chezmoiscripts/run_onchange_after_25-skills.sh.tmpl` | `~/.agents/skills/`, `~/.claude/skills/` | Skill list and sources; installed by the Skills CLI, not vendored |
| [Skills](skills.md) | `.chezmoidata/skills.yaml`, `.chezmoiscripts/run_onchange_after_25-skills.sh.tmpl` | `~/.agents/skills/`, `~/.claude/skills/` | The prdlk/skills source and skill list; installed by the Skills CLI, not vendored |
## Shell entry points