shell: fish functions -> ~/.local/bin executables + bash/zsh ports; manage ~/.agents

- 16 cross-shell utilities converted to sh/bash chezmoi executables:
  ai c2p cp-appid extract_agents fab gdc gh-sonr-org-migrate ghg-clone
  ghn gho git-summary launch_omp_livediff_overlay lc-elir mdcp mdp pj
  (ghg-clone not named ghg: unrelated cargo binary owns that name)
- cwd/history helpers stay per-shell: yy c cd clip-last + ghg/ghn/gho
  cd-wrappers in bash/functions/ and zsh/functions/, loaded by rc files
- fish keeps only shell-state functions; converted ones now hit PATH
- cp-appid ignore gating moved to .local/bin path
- dot_agents/skills: 82 skills materialized from dotstate storage so
  dot_claude skill symlinks resolve on fresh bootstrap; dotstate
  profile/symlinks.json released .agents/skills .bashrc .zshrc

.beads/interactions.jsonl

@@ -28,3 +28,5 @@
 {"id":"int-eab7a82b","kind":"field_change","created_at":"2026-08-09T18:58:33.495195245Z","actor":"Prad Nukala","issue_id":"chezmoi-42m","extra":{"field":"status","new_value":"in_progress","old_value":"open"}}
 {"id":"int-45a90136","kind":"field_change","created_at":"2026-08-09T18:58:46.086021951Z","actor":"Prad Nukala","issue_id":"chezmoi-udp","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Simulated: every .tmpl rendered in darwin/mac mode without error; darwin ignore file gates entire arch layer (niri/noctalia/fontconfig/mimeapps/systemd/niri-launch/fish niri bits); packages script renders brew-only; gitconfig/yazi render portable. Full apply on real Mac deferred until hardware available."}}
 {"id":"int-bc698341","kind":"field_change","created_at":"2026-08-10T18:09:40.450714596Z","actor":"Prad Nukala","issue_id":"chezmoi-09g","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"bash/zsh managed with starship; aliases single-sourced in .chezmoidata/aliases.yaml, rendered to fish + shell/aliases.sh; verified in all three shells"}}
+{"id":"int-6352d74c","kind":"field_change","created_at":"2026-08-10T19:14:56.357237414Z","actor":"Prad Nukala","issue_id":"chezmoi-288","extra":{"field":"status","new_value":"closed","old_value":"open","reason":"16 cross-shell utilities -> ~/.local/bin executables (ghg renamed ghg-clone: cargo-bin collision); cwd/history helpers ported as per-shell functions in bash/zsh function dirs; fish wrappers migrated to bins"}}
+{"id":"int-7ce36d07","kind":"field_change","created_at":"2026-08-10T19:14:56.649745176Z","actor":"Prad Nukala","issue_id":"chezmoi-hr0","extra":{"field":"status","new_value":"closed","old_value":"open","reason":"dot_agents/skills materialized (82 skills, secret-scanned); live symlink cut over to real dir; dotstate profile+symlinks.json dropped .agents/.bashrc/.zshrc; storage repo committed+pushed; 0 broken ~/.claude/skills links"}}

.beads/issues.jsonl

@@ -1,6 +1,8 @@
 {"_type":"issue","id":"chezmoi-1a0","title":"Secrets audit: grep all candidate content for tokens before any chezmoi add","description":"Grep sk-, ghp_, glpat-, Bearer, token, key = across all files destined for repo. secrets.fish goes to age-encrypted encrypted_ path (key ~/.config/chezmoi/key.txt, manual distribution, document in README). Claude: never .credentials.json.","status":"closed","priority":1,"issue_type":"task","owner":"prad@sonr.io","created_at":"2026-08-09T18:41:50Z","created_by":"Prad Nukala","updated_at":"2026-08-09T18:48:14Z","started_at":"2026-08-09T18:45:28Z","closed_at":"2026-08-09T18:48:14Z","close_reason":"secrets.fish age-encrypted; plaintext purged from git history and remote force-pushed; noctalia/plugins excluded (live ghp_ token); gh hosts.yml excluded; npmrc deferred; rotation recommended","dependency_count":0,"dependent_count":3,"comment_count":0}
 {"_type":"issue","id":"chezmoi-byc","title":"Gating skeleton: .chezmoi.toml.tmpl + .chezmoiignore.tmpl + packages.yaml skeleton","description":"promptOnce name/email/role (desktop|laptop|mac|server); chezmoiignore gates linux-only trees on darwin and vice versa; .chezmoidata/packages.yaml skeleton {arch:{pacman,aur},darwin:{brew,cask},shared:{gh_extensions,go,cargo}}. Machinery before content.","status":"closed","priority":1,"issue_type":"task","owner":"prad@sonr.io","created_at":"2026-08-09T18:41:50Z","created_by":"Prad Nukala","updated_at":"2026-08-09T18:47:06Z","started_at":"2026-08-09T18:45:28Z","closed_at":"2026-08-09T18:47:06Z","close_reason":"Closed","dependency_count":0,"dependent_count":13,"comment_count":0}
 {"_type":"issue","id":"chezmoi-rnv","title":"Inventory: disposition table for all dotstate synced paths","description":"Parse .dotstate-profiles.toml (Noctalia/Inir/Rogz/Vertical-Rogz_AppleStudio). Every synced path gets decision: universal / arch-gated / defer / drop / secret. Output table in MIGRATION-NOTES.md. Blocks all content.","status":"closed","priority":1,"issue_type":"task","owner":"prad@sonr.io","created_at":"2026-08-09T18:41:50Z","created_by":"Prad Nukala","updated_at":"2026-08-09T18:45:28Z","started_at":"2026-08-09T18:44:23Z","closed_at":"2026-08-09T18:45:28Z","close_reason":"Closed","dependency_count":0,"dependent_count":13,"comment_count":0}
+{"_type":"issue","id":"chezmoi-288","title":"shell: fish functions -\u003e chezmoi executables + bash/zsh ports","status":"closed","priority":2,"issue_type":"task","owner":"prad@sonr.io","created_at":"2026-08-10T19:04:18Z","created_by":"Prad Nukala","updated_at":"2026-08-10T19:14:56Z","closed_at":"2026-08-10T19:14:56Z","close_reason":"16 cross-shell utilities -\u003e ~/.local/bin executables (ghg renamed ghg-clone: cargo-bin collision); cwd/history helpers ported as per-shell functions in bash/zsh function dirs; fish wrappers migrated to bins","dependency_count":0,"dependent_count":0,"comment_count":0}
+{"_type":"issue","id":"chezmoi-hr0","title":"agents: manage ~/.agents so dot_claude skill symlinks resolve","status":"closed","priority":2,"issue_type":"task","owner":"prad@sonr.io","created_at":"2026-08-10T19:04:18Z","created_by":"Prad Nukala","updated_at":"2026-08-10T19:14:57Z","closed_at":"2026-08-10T19:14:57Z","close_reason":"dot_agents/skills materialized (82 skills, secret-scanned); live symlink cut over to real dir; dotstate profile+symlinks.json dropped .agents/.bashrc/.zshrc; storage repo committed+pushed; 0 broken ~/.claude/skills links","dependency_count":0,"dependent_count":0,"comment_count":0}
 {"_type":"issue","id":"chezmoi-09g","title":"shell: starship + shared aliases for bash/zsh (synced with fish)","description":"aliases.yaml chezmoidata as single source; fish 20-aliases becomes tmpl; dot_config/shell/aliases.sh.tmpl for bash/zsh; managed dot_bashrc/dot_zshrc with starship init (drop flyline/p10k)","status":"closed","priority":2,"issue_type":"task","assignee":"Prad Nukala","owner":"prad@sonr.io","created_at":"2026-08-10T18:06:52Z","created_by":"Prad Nukala","updated_at":"2026-08-10T18:09:40Z","started_at":"2026-08-10T18:07:59Z","closed_at":"2026-08-10T18:09:40Z","close_reason":"bash/zsh managed with starship; aliases single-sourced in .chezmoidata/aliases.yaml, rendered to fish + shell/aliases.sh; verified in all three shells","dependency_count":0,"dependent_count":0,"comment_count":0}
 {"_type":"issue","id":"chezmoi-42m","title":"Validation: Arch fresh bring-up in container","description":"docker run archlinux: bootstrap one-liner, packages install, chezmoi doctor clean, niri validate, fish -n all files, nvim --headless +Lazy! sync, tmux -f cfg new -d; kill-server, gh extension list matches manifest. Plus live machine chezmoi diff ~ empty.","status":"in_progress","priority":2,"issue_type":"task","owner":"prad@sonr.io","created_at":"2026-08-09T18:42:17Z","created_by":"Prad Nukala","updated_at":"2026-08-09T18:58:33Z","started_at":"2026-08-09T18:58:33Z","dependencies":[{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-21v","type":"blocks","created_at":"2026-08-09T14:42:58Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-4sj","type":"blocks","created_at":"2026-08-09T14:42:58Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-9sg","type":"blocks","created_at":"2026-08-09T14:42:59Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-a2k","type":"blocks","created_at":"2026-08-09T14:42:59Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-exq","type":"blocks","created_at":"2026-08-09T14:42:59Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-fde","type":"blocks","created_at":"2026-08-09T14:42:59Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-hou","type":"blocks","created_at":"2026-08-09T14:42:58Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-iu2","type":"blocks","created_at":"2026-08-09T14:42:59Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-sd9","type":"blocks","created_at":"2026-08-09T14:42:58Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-utl","type":"blocks","created_at":"2026-08-09T14:42:58Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-uw2","type":"blocks","created_at":"2026-08-09T14:42:57Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-x7f","type":"blocks","created_at":"2026-08-09T14:42:58Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-42m","depends_on_id":"chezmoi-xi5","type":"blocks","created_at":"2026-08-09T14:42:58Z","created_by":"Prad Nukala","metadata":"{}"}],"dependency_count":13,"dependent_count":1,"comment_count":0}
 {"_type":"issue","id":"chezmoi-5by","title":"Cutover: freeze dotstate for migrated paths","description":"After both validations: remove migrated paths from .dotstate-profiles.toml, tag dotstate pre-chezmoi-freeze, stop Dolt sync for those paths. Archive, never delete.","status":"open","priority":2,"issue_type":"task","owner":"prad@sonr.io","created_at":"2026-08-09T18:42:17Z","created_by":"Prad Nukala","updated_at":"2026-08-09T18:42:17Z","dependencies":[{"issue_id":"chezmoi-5by","depends_on_id":"chezmoi-42m","type":"blocks","created_at":"2026-08-09T14:42:25Z","created_by":"Prad Nukala","metadata":"{}"},{"issue_id":"chezmoi-5by","depends_on_id":"chezmoi-udp","type":"blocks","created_at":"2026-08-09T14:42:25Z","created_by":"Prad Nukala","metadata":"{}"}],"dependency_count":2,"dependent_count":0,"comment_count":0}